brainbox.tests.test_behavior

Classes

PsychofitTest
TestTraining
TestWheel

class TestWheel(methodName='runTest')

Bases: TestCase

setUp()

Load pickled test data Test data is in the form ((inputs), (outputs)) where inputs is a tuple containing a numpy array of timestamps and one of positions; outputs is a tuple of outputs from the function under test, i.e. wheel.movements

The first set - test_data[0] - comes from Rigbox MATLAB and contains around 200 seconds of (reasonably) evenly sampled wheel data from a 1024 ppr device with X4 encoding, in raw samples. test_data[0] = ((t, pos), (onsets, offsets, amps, peak_vel))

The second set - test_data[1] - comes from ibllib FPGA and contains around 180 seconds of unevenly sampled wheel data from a 1024 ppr device with X2 encoding, in linear cm units. test_data[1] = ((t, pos), (onsets, offsets, amps, peak_vel))

test_derivative()

test_movements()

test_movements_FPGA()

test_traces_by_trial()

test_direction_changes()

class TestTraining(methodName='runTest')

Bases: TestCase

setUp()

Test data contains training data from 10 consecutive sessions from subject SWC_054. It is a dict of trials objects with each key indication a session date. By using data combinations from different dates can test each of the different training criterion a subject goes through in the IBL training pipeline

test_psychometric_insufficient_data()

test_concatenate_and_computations()

test_in_training()

test_trained_1a()

test_trained_1b()

test_training_to_bias()

test_ready4ephys()

test_ready4delay()

test_ready4recording()

class PsychofitTest(methodName='runTest')

Bases: TestCase

setUp() → None

Data are 3 x n arrays

test_weibull50()

test_weibull()

test_erf_psycho()

test_erf_psycho_2gammas()

test_neg_likelihood()

test_mle_fit_psycho()

tearDown()

Hook method for deconstructing the test fixture after testing it.