ibllib.atlas.genes

Functions

allen_gene_expression

Reads in the Allen gene expression experiments binary data.

allen_gene_expression(filename='gene-expression.pqt', folder_cache=None)[source]

Reads in the Allen gene expression experiments binary data.

Parameters
  • filename

  • folder_cache

Returns

a dataframe of experiments, where each record correspond to a single gene expression

and a memmap of all experiments volumes, size (4345, 58, 41, 67) corresponding to (nexperiments, ml, dv, ap). The spacing between slices is 200 um