ibllib.tests.fixtures.utils

Functions

create_fake_alf_folder_dlc_data
create_fake_complete_ephys_session
create_fake_ephys_recording_bad_passive_transfer_sessions
create_fake_raw_behavior_data_folder
create_fake_raw_ephys_data_folder	create_fake_raw_ephys_data_folder creates raw_ephys_data folder can populate with empty files with expected names
create_fake_raw_video_data_folder
create_fake_session_folder
populate_raw_spikeglx	Touch file tree to emulate files saved by SpikeGLX
populate_task_settings

create_fake_session_folder(root_data_path, lab='fakelab', mouse='fakemouse', date='1900-01-01', num='001', increment=True)

create_fake_raw_ephys_data_folder(session_path, populate=True)

create_fake_raw_ephys_data_folder creates raw_ephys_data folder can populate with empty files with expected names

Parameters

• session_path ([type]) – [description]

• populate (bool, optional) – [description], defaults to True

Returns

[description]

Return type

[type]

populate_raw_spikeglx(session_path, model='3B', legacy=False, user_label='my_run', n_probes=2)

Touch file tree to emulate files saved by SpikeGLX

Parameters

• session_path – The raw ephys data path to place files

• model – Probe model file structure (‘3A’ or ‘3B’)

• legacy – If true, the emulate older SpikeGLX version where all files are saved

into a single folder :param user_label: User may input any name into SpikeGLX and filenames will include this :param n_probes: Number of probe datafiles to touch :return:

Examples

populate_raw_spikeglx(‘3A_folder’, model=’3A’, legacy=True, n_probes=1) 3A_folder

└───raw_ephys_folder

my_run_probe00_g0_t0.imec.ap.bin my_run_probe00_g0_t0.imec.ap.meta my_run_probe00_g0_t0.imec.lf.bin my_run_probe00_g0_t0.imec.lf.meta

populate_raw_spikeglx(‘3B_folder’, model=’3B’, n_probes=3) 3B_folder

└───my_run_g0_t0

my_run_g0_t0.imec0.ap.bin my_run_g0_t0.imec0.ap.meta my_run_g0_t0.imec0.lf.bin my_run_g0_t0.imec0.lf.meta my_run_g0_t0.imec1.ap.bin my_run_g0_t0.imec1.ap.meta my_run_g0_t0.imec1.lf.bin my_run_g0_t0.imec1.lf.meta my_run_g0_t0.imec2.ap.bin my_run_g0_t0.imec2.ap.meta my_run_g0_t0.imec2.lf.bin my_run_g0_t0.imec2.lf.meta my_run_g0_t0.nidq.bin my_run_g0_t0.nidq.meta

See also: http://billkarsh.github.io/SpikeGLX/help/parsing/

create_fake_raw_video_data_folder(session_path, populate=True)

create_fake_alf_folder_dlc_data(session_path, populate=True)

create_fake_raw_behavior_data_folder(session_path, populate=True, task='ephysCW', folder='raw_behavior_data')

populate_task_settings(fpath: Path, patch: dict)

create_fake_complete_ephys_session(root_data_path, lab='fakelab', mouse='fakemouse', date='1900-01-01', num='001', increment=True)

create_fake_ephys_recording_bad_passive_transfer_sessions(root_data_path, lab='fakelab', mouse='fakemouse', date='1900-01-01', num='001', increment=True)